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  • About
  • Frequently asked questions
    • How can I report bugs?
    • Are there any video tutorials?
    • Are there any segmentation routines?
    • Are there any tools for aligning projections?
    • What is the ASTRA toolbox?
    • Why were TomoPy and ASTRA integrated?
    • What is UFO?
    • Which platforms are supported?
    • Do TomoPy, ASTRA, and UFO support all GPUs?
    • Can I run this on a HPC cluster?
    • Why can’t I install TomoPy from PyPI using pip?
  • API reference
    • tomopy.misc.corr
      • adjust_range()
      • circ_mask()
      • enhance_projs_aps_1id()
      • gaussian_filter()
      • inpainter_morph()
      • median_filter()
      • median_filter3d()
      • median_filter_cuda()
      • median_filter_nonfinite()
      • remove_nan()
      • remove_neg()
      • remove_outlier()
      • remove_outlier1d()
      • remove_outlier3d()
      • remove_outlier_cuda()
      • remove_ring()
      • sobel_filter()
    • tomopy.misc.morph
      • downsample()
      • pad()
      • sino_360_t0_180()
      • sino_360_to_180()
      • trim_sinogram()
      • upsample()
    • tomopy.misc.phantom
      • baboon()
      • barbara()
      • cameraman()
      • checkerboard()
      • lena()
      • peppers()
      • phantom()
      • shepp2d()
      • shepp3d()
    • tomopy.prep.alignment
      • add_jitter()
      • add_noise()
      • align_joint()
      • align_seq()
      • blur_edges()
      • calc_slit_box_aps_1id()
      • distortion_correction_proj()
      • distortion_correction_sino()
      • find_slits_corners_aps_1id()
      • load_distortion_coefs()
      • remove_slits_aps_1id()
      • scale()
      • shift_images()
      • tilt()
    • tomopy.prep.normalize
      • minus_log()
      • normalize()
      • normalize_bg()
      • normalize_nf()
      • normalize_roi()
    • tomopy.prep.phase
      • retrieve_phase()
    • tomopy.prep.stripe
      • remove_all_stripe()
      • remove_dead_stripe()
      • remove_large_stripe()
      • remove_stripe_based_filtering()
      • remove_stripe_based_fitting()
      • remove_stripe_based_interpolation()
      • remove_stripe_based_sorting()
      • remove_stripe_fw()
      • remove_stripe_sf()
      • remove_stripe_ti()
      • stripes_detect3d()
      • stripes_mask3d()
    • tomopy.recon.algorithm
      • init_tomo()
      • recon()
    • tomopy.recon.rotation
      • find_center()
      • find_center_pc()
      • find_center_vo()
      • mask_empty_slice()
      • write_center()
    • tomopy.sim.project
      • add_drift()
      • add_focal_spot_blur()
      • add_gaussian()
      • add_poisson()
      • add_rings()
      • add_salt_pepper()
      • add_zingers()
      • angles()
      • fan_to_para()
      • para_to_fan()
      • project()
      • project2()
      • project3()
    • tomopy.sim.propagate
      • calc_intensity()
      • probe_gauss()
      • propagate_tie()
  • Install directions
    • Installing from Conda
    • Updating the installation
    • Build from Source
  • Examples
    • Loading tomographic data
    • Reconstruction with TomoPy
    • TomoPy with the ASTRA toolbox
    • TomoPy with LPrec
    • TomoPy with UFO
    • Vector Reconstruction
  • GPU Support
    • Supported GPUs
    • Building TomoPy with CUDA
    • Reconstructing with GPU offloading
    • Multithreading
  • Development Guide
    • Working with GitHub
      • Cloning the repository
      • Committing changes
      • Publishing your changes
    • Building TomoPy
      • Installing dependencies
        • Additional Windows Requirements
        • Additional CUDA Requirements
      • Compiling TomoPy
        • TomoPy (the python-only modules)
        • libtomo (the compiled shared libraries)
    • Running the Tests
    • Coding conventions
    • Package versioning
  • Credits
    • References
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