We kindly request that you cite the following article(s):

Cite [A1] if you use TomoPy.

Cite [A2] if you use ASTRA (or the TomoPy ASTRA wrapper).

Cite [A3] if you use vector reconstructions.

Cite [A4] if you use UFO (or the TomoPY UFO wrapper).


Gürsoy D, De Carlo F, Xiao X, and Jacobsen C. Tomopy: a framework for the analysis of synchrotron tomographic data. Journal of Synchrotron Radiation, 21(5):1188–1193, 2014.


Pelt D, Gürsoy D, Palenstijn WJ, Sijbers J, De Carlo F, and Batenburg KJ. Integration of tomopy and the astra toolbox for advanced processing and reconstruction of tomographic synchrotron data. Journal of Synchrotron Radiation, 23(3):842–849, 2016.


Hierro-Rodriguez A, Gürsoy D, Phatak C, Quiros C, Sorrentino A, Alvarez-Prado LM, Velez M, Martin JI, Alameda JM, Pereiro E, and Ferrer S. 3d reconstruction of magnetization from dichroic soft x-ray transmission tomography. Journal of Synchrotron Radiation, 2018.


Vogelgesang M, Chilingaryan S, Rolo T dos Santos, and Kopmann A. Ufo: a scalable gpu-based image processing framework for on-line monitoring. In Proceedings of The 14th IEEE Conference on High Performance Computing and Communication & The 9th IEEE International Conference on Embedded Software and Systems (HPCC-ICESS), 824–829. 6 2012.



Bergamaschi A, Medjoubi K, Messaoudi C, Marco S, and Somogyi A. Mmx-i: data-processing software for multimodal x-ray imaging and tomography. Journal od Synchrotron Radiation, 23:783–794, 2016.


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Phatak C and Gürsoy D. Iterative reconstruction of magnetic induction using lorentz transmission electron tomography. Ultramicroscopy, 150:54–64, 2015.


Francesco De Carlo, Doga Gursoy, Daniel Jackson Ching, Kees Joost Batenburg, Wolfgang Ludwig, Lucia Mancini, Federica Marone, Rajmund Mokso, Daniel M. Pelt, Jan Sijbers, and Mark Rivers. Tomobank: a tomographic data repository for computational x-ray science. Measurement Science and Technology, 2017. URL:


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Kazantsev D, Beveridge L, Shanmugasundar V, and Magdysyuk O. Conditional generative adversarial networks for stripe artefact removal in high-resolution x-ray tomography. Tomography of Materials and Structures, 4:100019, 2023.


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De Carlo F, Gursoy D, Marone F, Rivers M, Parkinson YD, Khan F, Schwarz N, Vine DJ, Vogt S, Gleber SC, Narayanan S, Newville M, Lanzirotti T, Sun Y, Hong YP, and Jacobsen C. Scientific data exchange: a schema for hdf5-based storage of raw and analyzed data. Journal of Synchrotron Radiation, 21(6):1224–1230, 2014.


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Bhimji W, Bard D, Roumanus M, Paul D, Ovsyannikov A, Friesen B, Bryson M, Correa, Lockwood GK, Tsulaia V, Byna S, Farrell S, Gürsoy D, Daley C, Beckner V, Van Straalen B, Wright NJ, Antypas K, and Prabhat M. Accelerating science with the nersc burts buffer early user program. In Cray User Group Conference. 2016.


Xu W and Feng D. Studying performance of a penalized maximum likelihood method for pet reconstruction on nvidia gpu and intel xeon phi coprocessor. Proc. 4th Intl Conf. Image Formation in X-ray Computed Tomography, pages 191–194, 2016.