Credits

We kindly request that you cite the following article(s):

Cite [A1] if you use TomoPy.


Cite [A2] if you use ASTRA (or the TomoPy ASTRA wrapper).


Cite [A3] if you use vector reconstructions.


Cite [A4] if you use UFO (or the TomoPY UFO wrapper).


[A1]

Gürsoy D, De Carlo F, Xiao X, and Jacobsen C. Tomopy: a framework for the analysis of synchrotron tomographic data. Journal of Synchrotron Radiation, 21(5):1188–1193, 2014.

[A2]

Pelt D, Gürsoy D, Palenstijn WJ, Sijbers J, De Carlo F, and Batenburg KJ. Integration of tomopy and the astra toolbox for advanced processing and reconstruction of tomographic synchrotron data. Journal of Synchrotron Radiation, 23(3):842–849, 2016.

[A3]

Hierro-Rodriguez A, Gürsoy D, Phatak C, Quiros C, Sorrentino A, Alvarez-Prado LM, Velez M, Martin JI, Alameda JM, Pereiro E, and Ferrer S. 3d reconstruction of magnetization from dichroic soft x-ray transmission tomography. Journal of Synchrotron Radiation, 2018.

[A4]

Vogelgesang M, Chilingaryan S, Rolo T dos Santos, and Kopmann A. Ufo: a scalable gpu-based image processing framework for on-line monitoring. In Proceedings of The 14th IEEE Conference on High Performance Computing and Communication & The 9th IEEE International Conference on Embedded Software and Systems (HPCC-ICESS), 824–829. 6 2012.

References

[B1]

Bergamaschi A, Medjoubi K, Messaoudi C, Marco S, and Somogyi A. Mmx-i: data-processing software for multimodal x-ray imaging and tomography. Journal od Synchrotron Radiation, 23:783–794, 2016.

[B2]

Kak AC and Slaney M. Principles of computerized tomographic imaging. Volume 33. SIAM, 1988.

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Dowd BA, Campbell GH, Marr RB, Nagarkar VV, Tipnis SV, Axe L, and Siddons DP. Developments in synchrotron x-ray computed microtomography at the national synchrotron light source. In Proc. SPIE, volume 3772, 224–236. 1999.

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Phatak C and Gürsoy D. Iterative reconstruction of magnetic induction using lorentz transmission electron tomography. Ultramicroscopy, 150:54–64, 2015.

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De Carlo F, Gursoy D, Marone F, Rivers M, Parkinson YD, Khan F, Schwarz N, Vine DJ, Vogt S, Gleber SC, Narayanan S, Newville M, Lanzirotti T, Sun Y, Hong YP, and Jacobsen C. Scientific data exchange: a schema for hdf5-based storage of raw and analyzed data. Journal of Synchrotron Radiation, 21(6):1224–1230, 2014.

[B15]

Manuel GS, Thurman ST, and Fienup JR. Efficient subpixel image registration algorithms. Optics Letters, 33(2):156–158, 2008.

[B16]

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Vogelgesang M, Rota L, Ardila Perez Luis E, Caselle M, Chilingaryan S, and Kopmann A. High-throughput data acquisition and processing for real-time x-ray imaging. In Proc. SPIE, volume 9967, 996715–996715–9. 2016. doi:10.1117/12.2237611.

[B21]

De Jonge MD, Ryan CG, and Jacobsen C. X-ray nanoprobes and diffraction-limited storage rings: opportunities and challenges of fluorescence tomography of biological specimens. Journal of Synchrotron Radiation, 21(5):1031–1047, 2014.

[B22]

Rivers ML. Tomorecon: high-speed tomography reconstruction on workstations using multi-threading. In Proc. SPIE, volume 8506, 85060U–85060U–13. 2012.

[B23]

Vo N, and Atwood RC, and Drakopoulos M. Superior techniques for eliminating ring artifacts in x-ray micro-tomography. Optics Express, 26(22):28396–28412, 2018.

[B24]

Vo N, Drakopoulos M, Atwood RC, and Reinhard C. Reliable method for calculating the center of rotation in parallel-beam tomography. Optics Express, 22(16):19078–19086, 2014.

[B25]

Biçer T, Gürsoy D, Kettimuthu R, De Carlo F, Agrawal G, and Foster IT. Rapid tomographic image reconstruction via large-scale parallelization. In Lecture Notes in Computer Science, volume 9233, 289–302. 2015.

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Nghia T. Vo, Robert C. Atwood, and Michael Drakopoulos. Radial lens distortion correction with sub-pixel accuracy for x-ray micro-tomography. Optics Express, 23(25):32859–32868, 2015. doi:10.1364/OE.23.032859.

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Bhimji W, Bard D, Roumanus M, Paul D, Ovsyannikov A, Friesen B, Bryson M, Correa, Lockwood GK, Tsulaia V, Byna S, Farrell S, Gürsoy D, Daley C, Beckner V, Van Straalen B, Wright NJ, Antypas K, and Prabhat M. Accelerating science with the nersc burts buffer early user program. In Cray User Group Conference. 2016.

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Xu W and Feng D. Studying performance of a penalized maximum likelihood method for pet reconstruction on nvidia gpu and intel xeon phi coprocessor. Proc. 4th Intl Conf. Image Formation in X-ray Computed Tomography, pages 191–194, 2016.